Bio2BEL
Bio2BEL is a project aimed at integrating biological databases and other structured knowledge sources.
Because they come from a wide variety of schemata, this package provides tools for converting them into the unified
framework of Biological Expression Language.
This package provides guidelines, tutorials, and tools for making standardized bio2bel
packages as well as a
unifying framework for integrating them.
Installation
Easiest
Download the latest stable code from PyPI with:
$ python3 -m pip install bio2bel
Get the Latest
Download the most recent code from GitHub with:
$ python3 -m pip install git+https://github.com/bio2bel/bio2bel.git
For Developers
Clone the repository from GitHub and install in editable mode with:
$ git clone https://github.com/bio2bel/bio2bel.git
$ cd bio2bel
$ python3 -m pip install -e .
Testing
Bio2BEL is tested with Python3 on Linux using Travis CI.