Index

A

add_homologene_namespace_to_graph() (bio2bel_entrez.manager.Manager method)

as_bel() (bio2bel_entrez.models.Gene method) (bio2bel_entrez.models.Homologene method)

B

bel_encoding() (bio2bel_entrez.models.Gene property) bio2bel_entrez (module)

bio2bel_entrez.constants (module) bio2bel_entrez.manager (module) bio2bel_entrez.models (module)

C

CONSORTIUM_SPECIES_MAPPING (in module bio2bel_entrez.constants) count_genes() (bio2bel_entrez.manager.Manager method)

count_homologenes() (bio2bel_entrez.manager.Manager method) count_species() (bio2bel_entrez.manager.Manager method)

D

database (bio2bel_entrez.models.Xref attribute)

description (bio2bel_entrez.models.Gene attribute)

E

enrich_equivalences() (bio2bel_entrez.manager.Manager method) enrich_genes_with_homologenes() (bio2bel_entrez.manager.Manager method)

enrich_orthologies() (bio2bel_entrez.manager.Manager method) entrez_id (bio2bel_entrez.models.Gene attribute)

G

Gene (class in bio2bel_entrez.models) GENE_INFO_COLUMNS (in module bio2bel_entrez.constants) get_gene_by_entrez_id() (bio2bel_entrez.manager.Manager method) get_gene_by_hgnc_name() (bio2bel_entrez.manager.Manager method) get_gene_by_mgi_name() (bio2bel_entrez.manager.Manager method)

get_gene_by_rgd_name() (bio2bel_entrez.manager.Manager method) get_genes_by_name() (bio2bel_entrez.manager.Manager method) get_or_create_gene() (bio2bel_entrez.manager.Manager method) get_or_create_homologene() (bio2bel_entrez.manager.Manager method) get_or_create_species() (bio2bel_entrez.manager.Manager method)

H

Homologene (class in bio2bel_entrez.models)

I

is_populated() (bio2bel_entrez.manager.Manager method) is_transcribed() (bio2bel_entrez.models.Gene property)

is_translated() (bio2bel_entrez.models.Gene property) iter_genes() (bio2bel_entrez.manager.Manager method)

L

list_genes() (bio2bel_entrez.manager.Manager method) list_homologenes() (bio2bel_entrez.manager.Manager method)

list_species() (bio2bel_entrez.manager.Manager method) lookup_node() (bio2bel_entrez.manager.Manager method)

M

Manager (class in bio2bel_entrez.manager)

N

name (bio2bel_entrez.models.Gene attribute)

namespace_model (bio2bel_entrez.manager.Manager attribute) normalize_genes() (bio2bel_entrez.manager.Manager method)

P

populate() (bio2bel_entrez.manager.Manager method)

populate_gene_info() (bio2bel_entrez.manager.Manager method) populate_homologene() (bio2bel_entrez.manager.Manager method)

S

Species (class in bio2bel_entrez.models)

summarize() (bio2bel_entrez.manager.Manager method)

T

taxonomy_id (bio2bel_entrez.models.Species attribute)

to_json() (bio2bel_entrez.models.Gene method) type_of_gene (bio2bel_entrez.models.Gene attribute)

V

value (bio2bel_entrez.models.Xref attribute)

X

Xref (class in bio2bel_entrez.models)