Bio2BEL HSDN
Converts the human symptoms-disease network produced by Zhou and Himmelstein to BEL.
Manager for Bio2BEL HSDN.
-
class
bio2bel_hsdn.manager.Manager(*args, **kwargs)[source]
Disease-symptom associations.
-
count_diseases()[source]
Count the diseases in the database.
- Return type
int
-
count_relations()[source]
Count the number of relations in the database.
- Return type
int
-
count_symptoms()[source]
Count the symptoms in the database.
- Return type
int
-
static
is_populated()[source]
Check if the Bio2BEL HSDN database is populated.
- Return type
bool
-
populate()[source]
Populate the Bio2BEL HSDN database.
- Return type
None
-
summarize()[source]
Summarize the contents of the Bio2BEL HSDN database.
- Return type
Mapping[str, int]
-
to_bel()[source]
Convert the HSDN to BEL.
- Return type
BELGraph
SQLAlchemy models for Bio2BEL HSDN.
-
class
bio2bel_hsdn.models.Base(**kwargs)
The most base type
bio2bel_hsdn
Default connection at None
using Bio2BEL v0.2.1
bio2bel_hsdn [OPTIONS] COMMAND [ARGS]...
Options
-
-c, --connection <connection>
Defaults to None
bel
Manage BEL.
bio2bel_hsdn bel [OPTIONS] COMMAND [ARGS]...
upload
Upload BEL to network store.
bio2bel_hsdn bel upload [OPTIONS]
Options
-
-c, --connection <connection>
write
Write as BEL Script.
bio2bel_hsdn bel write [OPTIONS]
Options
-
-o, --output <output>