Command Line Interface¶
The command line interface allows you to communicate with the package and perform basic functions such as:
Populate the database:
python3 -m bio2bel_kegg populate
. By default the database is reset every time is populated. However, another optional parameter “–reset-db=False”, allows you to avoid the reset. More logging can be activated by added “-vv” or “-v” as an argument.Drop the database:
python3 -m bio2bel_kegg drop
. More logging can be activated by added “-vv” or “-v” as an rgument.Export gene sets as an excel file:
python3 -m bio2bel_kegg export
.