Index

B

bio2bel_kegg (module) bio2bel_kegg.constants (module)

bio2bel_kegg.manager (module) bio2bel_kegg.models (module) bio2bel_kegg.web (module)

C

count_pathways() (bio2bel_kegg.manager.Manager method)

count_proteins() (bio2bel_kegg.manager.Manager method)

E

enrich_kegg_pathway() (bio2bel_kegg.manager.Manager method)

enrich_kegg_protein() (bio2bel_kegg.manager.Manager method)

G

get_gene_set() (bio2bel_kegg.models.Pathway method) get_or_create_pathway() (bio2bel_kegg.manager.Manager method) get_pathway_graph() (bio2bel_kegg.manager.Manager method) get_pathways_ids() (bio2bel_kegg.models.Protein method)

get_protein_by_hgnc_id() (bio2bel_kegg.manager.Manager method) get_protein_by_hgnc_symbol() (bio2bel_kegg.manager.Manager method) get_protein_by_kegg_id() (bio2bel_kegg.manager.Manager method) get_uniprot_ids() (bio2bel_kegg.models.Protein method)

H

hgnc_id (bio2bel_kegg.models.Protein attribute)

hgnc_symbol (bio2bel_kegg.models.Protein attribute)

K

kegg_id (bio2bel_kegg.models.Pathway attribute) (bio2bel_kegg.models.Protein attribute)

L

list_pathways() (bio2bel_kegg.manager.Manager method)

M

Manager (class in bio2bel_kegg.manager)

N

name (bio2bel_kegg.models.Pathway attribute)

namespace_model (bio2bel_kegg.manager.Manager attribute)

P

Pathway (class in bio2bel_kegg.models) pathway_model (bio2bel_kegg.manager.Manager attribute) pathway_model_identifier_column (bio2bel_kegg.manager.Manager attribute)

populate() (bio2bel_kegg.manager.Manager method) Protein (class in bio2bel_kegg.models) protein_model (bio2bel_kegg.manager.Manager attribute)

R

resource_id() (bio2bel_kegg.models.Pathway property)

S

serialize_to_pathway_node() (bio2bel_kegg.models.Pathway method)

summarize() (bio2bel_kegg.manager.Manager method)

T

to_bel() (bio2bel_kegg.manager.Manager method)

to_pybel() (bio2bel_kegg.models.Protein method)

U

uniprot_id (bio2bel_kegg.models.Protein attribute)

url() (bio2bel_kegg.models.Pathway property)