Bio2BEL Reactome
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Manager
Command Line Interface
Constants
Models
Web
Bio2BEL Reactome
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Index
B
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C
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G
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M
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N
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P
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S
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T
B
bio2bel_reactome
module
bio2bel_reactome.constants
module
bio2bel_reactome.manager
module
bio2bel_reactome.models
module
bio2bel_reactome.web
module
C
Chemical (class in bio2bel_reactome.models)
count_chemicals() (bio2bel_reactome.manager.Manager method)
count_species() (bio2bel_reactome.manager.Manager method)
G
get_all_top_hierarchy_pathways() (bio2bel_reactome.manager.Manager method)
get_chemical_by_chebi_id() (bio2bel_reactome.manager.Manager method)
get_gene_sets() (bio2bel_reactome.manager.Manager method)
get_human_pathways() (bio2bel_reactome.manager.Manager method)
get_or_create_chemical() (bio2bel_reactome.manager.Manager method)
get_or_create_pathway() (bio2bel_reactome.manager.Manager method)
get_or_create_protein() (bio2bel_reactome.manager.Manager method)
get_or_create_species() (bio2bel_reactome.manager.Manager method)
get_pathway_names_to_ids() (bio2bel_reactome.manager.Manager method)
get_pathway_parent_by_id() (bio2bel_reactome.manager.Manager method)
get_pathways_by_species() (bio2bel_reactome.manager.Manager method)
get_protein_by_uniprot_id() (bio2bel_reactome.manager.Manager method)
get_species_by_name() (bio2bel_reactome.manager.Manager method)
get_top_hiearchy_parent_by_id() (bio2bel_reactome.manager.Manager method)
M
Manager (class in bio2bel_reactome.manager)
module
bio2bel_reactome
bio2bel_reactome.constants
bio2bel_reactome.manager
bio2bel_reactome.models
bio2bel_reactome.web
N
name (bio2bel_reactome.models.Species attribute)
namespace_model (bio2bel_reactome.manager.Manager attribute)
P
Pathway (class in bio2bel_reactome.models)
pathway_model (bio2bel_reactome.manager.Manager attribute)
populate() (bio2bel_reactome.manager.Manager method)
Protein (class in bio2bel_reactome.models)
protein_model (bio2bel_reactome.manager.Manager attribute)
S
Species (class in bio2bel_reactome.models)
summarize() (bio2bel_reactome.manager.Manager method)
T
taxonomy_id (bio2bel_reactome.models.Species attribute)
to_pybel() (bio2bel_reactome.models.Chemical method)
(bio2bel_reactome.models.Protein method)
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