Bio2BEL

Table of Contents

• Introduction
  • Citations
• Repositories
• Sources
  • BioGRID
  • IntAct
  • Protein Interactions Database (PID)
  • TFRegulons
• How to Make a Bio2BEL Package
  • Naming the Package
  • Organizing Constants
  • Making a Manager
  • Mixins
  • Organizing the Manager
  • Making a Command Line Interface
  • Setting up __main__.py
  • Entry Points in setup.py
  • Testing
• Reproducibility
• Input and Output
  • PyKEEN
  • Automation
• Using the CLI

Reference

• Downloading
• Utilities
• Testing

Indices and tables

• Index

• Module Index

• Search Page