Constants¶
Constants for Bio2BEL GO.
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bio2bel_go.constants.
GO_OBO_URL
= 'http://purl.obolibrary.org/obo/go/go-basic.obo'¶ The web location of the GO OBO file
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bio2bel_go.constants.
GO_OBO_PATH
= '/home/docs/.bio2bel/go/go-basic.obo'¶ The local cache location where the GO OBO file is stored
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bio2bel_go.constants.
GO_OBO_PICKLE_PATH
= '/home/docs/.bio2bel/go/go-basic.obo.gpickle'¶ The local cache location where the parsed and pickled GO OBO file is stored
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bio2bel_go.constants.
GAF_COLUMNS
= ['db', 'db_id', 'db_symbol', 'qualifier', 'go_id', 'provenance', 'evidence_code', 'modifications', 'aspect', 'db_label', 'db_synonym', 'db_type', 'taxonomy_id', 'date', 'assigned_by', 'annotation_extensions', 'gene_product_id']¶ GAF columns, see: http://geneontology.org/docs/go-annotation-file-gaf-format-2.1/