Constants

Constants for Bio2BEL GO.

bio2bel_go.constants.GO_OBO_URL = 'http://purl.obolibrary.org/obo/go/go-basic.obo'

The web location of the GO OBO file

bio2bel_go.constants.GO_OBO_PATH = '/home/docs/.bio2bel/go/go-basic.obo'

The local cache location where the GO OBO file is stored

bio2bel_go.constants.GO_OBO_PICKLE_PATH = '/home/docs/.bio2bel/go/go-basic.obo.gpickle'

The local cache location where the parsed and pickled GO OBO file is stored

bio2bel_go.constants.GAF_COLUMNS = ['db', 'db_id', 'db_symbol', 'qualifier', 'go_id', 'provenance', 'evidence_code', 'modifications', 'aspect', 'db_label', 'db_synonym', 'db_type', 'taxonomy_id', 'date', 'assigned_by', 'annotation_extensions', 'gene_product_id']

GAF columns, see: http://geneontology.org/docs/go-annotation-file-gaf-format-2.1/