Bio2BEL HMDB
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Contents:
Enrichment
Manager
Models
Creating BEL Namespaces
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Bio2BEL HMDB
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
A
accession (bio2bel_hmdb.models.Metabolite attribute)
average_molecular_weight (bio2bel_hmdb.models.Metabolite attribute)
B
bigg_id (bio2bel_hmdb.models.Metabolite attribute)
bio2bel_hmdb (module)
bio2bel_hmdb.enrich (module)
bio2bel_hmdb.manager (module)
bio2bel_hmdb.models (module)
biocyc_id (bio2bel_hmdb.models.Metabolite attribute)
biofluid (bio2bel_hmdb.models.Biofluid attribute)
Biofluid (class in bio2bel_hmdb.models)
Biofunction (class in bio2bel_hmdb.models)
C
cas_registry_number (bio2bel_hmdb.models.Metabolite attribute)
CellularLocation (class in bio2bel_hmdb.models)
chebi_id (bio2bel_hmdb.models.Metabolite attribute)
chemical_formula (bio2bel_hmdb.models.Metabolite attribute)
chemspider_id (bio2bel_hmdb.models.Metabolite attribute)
count_biofunctions() (bio2bel_hmdb.manager.Manager method)
count_cellular_locations() (bio2bel_hmdb.manager.Manager method)
count_diseases() (bio2bel_hmdb.manager.Manager method)
count_metabolites() (bio2bel_hmdb.manager.Manager method)
count_pathways() (bio2bel_hmdb.manager.Manager method)
count_proteins() (bio2bel_hmdb.manager.Manager method)
count_references() (bio2bel_hmdb.manager.Manager method)
count_tissues() (bio2bel_hmdb.manager.Manager method)
creation_date (bio2bel_hmdb.models.Metabolite attribute)
D
description (bio2bel_hmdb.models.Metabolite attribute)
dion (bio2bel_hmdb.models.Disease attribute)
Disease (class in bio2bel_hmdb.models)
drugbank_id (bio2bel_hmdb.models.Metabolite attribute)
drugbank_metabolite_id (bio2bel_hmdb.models.Metabolite attribute)
E
enrich_diseases_metabolites() (in module bio2bel_hmdb.enrich)
enrich_metabolites_diseases() (in module bio2bel_hmdb.enrich)
enrich_metabolites_proteins() (in module bio2bel_hmdb.enrich)
enrich_proteins_metabolites() (in module bio2bel_hmdb.enrich)
F
foodb_id (bio2bel_hmdb.models.Metabolite attribute)
G
gene_name (bio2bel_hmdb.models.Protein attribute)
get_hmdb_accession() (bio2bel_hmdb.manager.Manager method)
get_hmdb_diseases() (bio2bel_hmdb.manager.Manager method)
get_metabolite_by_accession() (bio2bel_hmdb.manager.Manager method)
get_reference_by_pubmed_id() (bio2bel_hmdb.manager.Manager method)
H
het_id (bio2bel_hmdb.models.Metabolite attribute)
hpo (bio2bel_hmdb.models.Disease attribute)
I
inchi (bio2bel_hmdb.models.Metabolite attribute)
inchikey (bio2bel_hmdb.models.Metabolite attribute)
is_populated() (bio2bel_hmdb.manager.Manager method)
iupac_name (bio2bel_hmdb.models.Metabolite attribute)
K
kegg_id (bio2bel_hmdb.models.Metabolite attribute)
kegg_map_id (bio2bel_hmdb.models.Pathway attribute)
kind (bio2bel_hmdb.models.PropertyKinds attribute)
knapsack_id (bio2bel_hmdb.models.Metabolite attribute)
M
Manager (class in bio2bel_hmdb.manager)
mesh_diseases (bio2bel_hmdb.models.Disease attribute)
Metabolite (class in bio2bel_hmdb.models)
MetaboliteBiofluid (class in bio2bel_hmdb.models)
MetaboliteBiofunction (class in bio2bel_hmdb.models)
MetaboliteCellularLocation (class in bio2bel_hmdb.models)
MetaboliteDiseaseReference (class in bio2bel_hmdb.models)
MetabolitePathway (class in bio2bel_hmdb.models)
MetaboliteProtein (class in bio2bel_hmdb.models)
MetaboliteReference (class in bio2bel_hmdb.models)
MetaboliteSynonym (class in bio2bel_hmdb.models)
MetaboliteTissue (class in bio2bel_hmdb.models)
metagene (bio2bel_hmdb.models.Metabolite attribute)
metlin_id (bio2bel_hmdb.models.Metabolite attribute)
monisotopic_molecular_weight (bio2bel_hmdb.models.Metabolite attribute)
N
name (bio2bel_hmdb.models.Disease attribute)
(bio2bel_hmdb.models.Metabolite attribute)
(bio2bel_hmdb.models.Pathway attribute)
nugowiki (bio2bel_hmdb.models.Metabolite attribute)
O
omim_id (bio2bel_hmdb.models.Disease attribute)
P
Pathway (class in bio2bel_hmdb.models)
phenol_explorer_compound_id (bio2bel_hmdb.models.Metabolite attribute)
phenol_explorer_metabolite_id (bio2bel_hmdb.models.Metabolite attribute)
populate() (bio2bel_hmdb.manager.Manager method)
PropertyKinds (class in bio2bel_hmdb.models)
PropertySource (class in bio2bel_hmdb.models)
PropertyValues (class in bio2bel_hmdb.models)
Protein (class in bio2bel_hmdb.models)
protein_accession (bio2bel_hmdb.models.Protein attribute)
protein_type (bio2bel_hmdb.models.Protein attribute)
pubchem_compound_id (bio2bel_hmdb.models.Metabolite attribute)
pubmed_id (bio2bel_hmdb.models.Reference attribute)
Q
query_disease_associated_metabolites() (bio2bel_hmdb.manager.Manager method)
query_metabolite_associated_diseases() (bio2bel_hmdb.manager.Manager method)
query_metabolite_associated_proteins() (bio2bel_hmdb.manager.Manager method)
query_protein_associated_metabolites() (bio2bel_hmdb.manager.Manager method)
R
Reference (class in bio2bel_hmdb.models)
reference_text (bio2bel_hmdb.models.Reference attribute)
S
secondary_accession (bio2bel_hmdb.models.SecondaryAccession attribute)
SecondaryAccession (class in bio2bel_hmdb.models)
serialize_to_bel() (bio2bel_hmdb.models.Disease method)
(bio2bel_hmdb.models.Metabolite method)
(bio2bel_hmdb.models.Protein method)
smiles (bio2bel_hmdb.models.Metabolite attribute)
smpdb_id (bio2bel_hmdb.models.Pathway attribute)
state (bio2bel_hmdb.models.Metabolite attribute)
summarize() (bio2bel_hmdb.manager.Manager method)
synonym (bio2bel_hmdb.models.MetaboliteSynonym attribute)
synthesis_reference (bio2bel_hmdb.models.Metabolite attribute)
T
tissue (bio2bel_hmdb.models.Tissue attribute)
Tissue (class in bio2bel_hmdb.models)
trivial (bio2bel_hmdb.models.Metabolite attribute)
U
uniprot_id (bio2bel_hmdb.models.Protein attribute)
update_date (bio2bel_hmdb.models.Metabolite attribute)
V
value (bio2bel_hmdb.models.PropertyValues attribute)
version (bio2bel_hmdb.models.Metabolite attribute)
W
wikipedia (bio2bel_hmdb.models.Metabolite attribute)
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